- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.10330:Probable inorganic polyphosphate/atp-NAD kinase; domain 1
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1suw | [A4] | [A4] | [A4] | 2.45 | NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | |||
1u0r | [A4] | [A4] | [A4] | 2.8 | ||||
1u0t | [A4] | [A4] | [A4] | 2.3 | ||||
1y3h | [A4] | [A4] | [A4] | 2.8 | ||||
1y3i | [A4] | [A4] | [A4] | 2.6 | GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO4:SULFATE ION | |||
1yt5 | [A2] | [A2] | [A2] | 2.3 | SO4:SULFATE ION | |||
1z0s | [A4] | [A4] | [A4] | 1.7 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION POP:PYROPHOSPHATE 2- | |||
1z0u | [A4] | [A4] | [A4] | 2 | NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE SO4:SULFATE ION | |||
1z0z | [A4] | [A4] | [A4] | 2.85 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2an1 | [A2] | [A2] | [A2] | 2 | ||||
2bon | [A] | [A] | [A] | 1.9 | MG:MAGNESIUM ION | |||
2i1w | [A4] | [A4] | [A4] | 2.34 | IOD:IODIDE ION | |||
2i29 | [A4] | [A4] | [A4] | 2.1 | CIT:CITRIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2i2a | [A4] | [A4] | [A4] | 2.1 | GOL:GLYCEROL NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | |||
2i2b | [A4] | [A4] | [A4] | 2.1 | CC5:BETA-D-ERYTHROFURANOSYL-ADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
2i2c | [A4] | [A4] | [A4] | 1.85 | DTA:(2S,3S,4R,5R,2___sq___S,3___sq___S,4___sq___R,5___sq___R)-2,2___sq___-[DITHIOBIS(METHYLENE)]BIS[5-(6-AMINO-9H-PURIN-9-YL)TETRAHYDROFURAN-3,4-DIOL] PG4:TETRAETHYLENE GLYCOL | |||
2i2d | [A4] | [A4] | [A4] | 2.22 | A2D:BIS{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL} DIHYDROGENDIPHOSPHATE CIT:CITRIC ACID | |||
2i2f | [A4] | [A4] | [A4] | 1.9 | GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PO4:PHOSPHATE ION | |||
2jgr | [A] | [A] | [A] | 2.65 | MSE:SELENOMETHIONINE POP:PYROPHOSPHATE 2- | |||
2p1r | [A2] | [A2] | [A2] | 2.5 | CA:CALCIUM ION CL:CHLORIDE ION MSE:SELENOMETHIONINE NA:SODIUM ION | |||
2q5f | [A4] | [A4] | [A4] | 1.9 | DTA:(2S,3S,4R,5R,2___sq___S,3___sq___S,4___sq___R,5___sq___R)-2,2___sq___-[DITHIOBIS(METHYLENE)]BIS[5-(6-AMINO-9H-PURIN-9-YL)TETRAHYDROFURAN-3,4-DIOL] | |||
2qv7 | [A] | [A] | [A] | 2.3 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
2qvl | [A] | [A] | [A] | 2.4 | MSE:SELENOMETHIONINE | |||
3afo | [A4] | [A4] | [A4] | 2 | MPD:(4S)-2-METHYL-2,4-PENTANEDIOL NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | |||
3pfn | [A4] | [A4] | [A4] | 2.7 | MSE:SELENOMETHIONINE UNX:UNKNOWN ATOM OR ION | |||
3s40 | [A] | [A] | [A] | 2.1 | MSE:SELENOMETHIONINE | |||
3t5p | [A4] | [A4] | [A4] | 2.5 | MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
3v7u | [A4] | [A4] | [A4] | 1.97 | CIT:CITRIC ACID GOL:GLYCEROL MTA:5___sq___-DEOXY-5___sq___-METHYLTHIOADENOSINE | |||
3v7w | [A4] | [A4] | [A4] | 2.01 | CIT:CITRIC ACID GOL:GLYCEROL ZAS:5___sq___-AZIDO-5___sq___-DEOXYADENOSINE | |||
3v7y | [A4] | [A4] | [A4] | 1.97 | A3N:5___sq___-DEOXY-5___sq___-(PROP-2-YN-1-YLAMINO)ADENOSINE CIT:CITRIC ACID | |||
3v80 | [A4] | [A4] | [A4] | 2.03 | AOC:5___sq___-O-PROP-2-YN-1-YLADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
3v8m | [A4] | [A4] | [A4] | 2.48 | CIT:CITRIC ACID Z8B:5___sq___-AZIDO-8-BROMO-5___sq___-DEOXYADENOSINE | |||
3v8n | [A4] | [A4] | [A4] | 2.38 | 5CI:8-BROMO-5___sq___-{[3-CARBOXY-2-(CARBOXYMETHYL)-2-HYDROXYPROPANOYL]AMINO}-5___sq___-DEOXYADENOSINE 5NB:5___sq___-AMINO-8-BROMO-5___sq___-DEOXYADENOSINE CIT:CITRIC ACID | |||
3v8p | [A4] | [A4] | [A4] | 2.29 | CIT:CITRIC ACID ZNB:2-[6-AZANYL-9-[(2R,3R,4S,5R)-5-[[(AZANYLIDENE-$L^{4}-AZANYLIDENE)AMINO]METHYL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PURIN-8-YL]SULFANYL-N-[[(2R,3S,4R,5R)-5-(6-AZANYL-8-BROMANYL-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL]ETHANAMIDE | |||
3v8q | [A4] | [A4] | [A4] | 2.37 | 5N5:5___sq___-AMINO-5___sq___-DEOXYADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
3v8r | [A4] | [A4] | [A4] | 2.39 | 5NB:5___sq___-AMINO-8-BROMO-5___sq___-DEOXYADENOSINE CIT:CITRIC ACID | |||
3vzb | [A] | [A] | [A] | 2 | EDO:1,2-ETHANEDIOL SO4:SULFATE ION SQS:(2S,3R,4E)-2-AMINOOCTADEC-4-ENE-1,3-DIOL | |||
3vzc | [A] | [A] | [A] | 2.3 | EDO:1,2-ETHANEDIOL UUL:4-{[4-(4-CHLOROPHENYL)-1,3-THIAZOL-2-YL]AMINO}PHENOL | |||
3vzd | [A6] | [A6] | [A6] | 2.3 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE CL:CHLORIDE ION MG:MAGNESIUM ION POP:PYROPHOSPHATE 2- UUL:4-{[4-(4-CHLOROPHENYL)-1,3-THIAZOL-2-YL]AMINO}PHENOL | |||
4dy6 | [A4] | [A4] | [A4] | 2.2 | A22:[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE CIT:CITRIC ACID | |||
4hao | [A2] | [A2] | [A2] | 2.55 | ACY:ACETIC ACID SO4:SULFATE ION | |||
4l02 | [A] | [A] | [A] | 2.75 | 1V2:(2R,4S)-1-[2-(4-{[4-(3,4-DICHLOROPHENYL)-1,3-THIAZOL-2-YL]AMINO}PHENYL)ETHYL]-2-(HYDROXYMETHYL)PIPERIDIN-4-OL | |||
4v24 | [A] | [A] | [A] | 1.8 | ACT:ACETATE ION GYR:{(2R)-1-[4-({3-METHYL-5-[(PHENYLSULFONYL)METHYL]PHENOXY}METHYL)BENZYL]PYRROLIDIN-2-YL}METHANOL | |||
4wer | [A2] | [A2] | [A2] | 2.05 | AMP:ADENOSINE MONOPHOSPHATE EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE | |||
4wrr | [A4] | [A4] | [A4] | 2.16 | MG:MAGNESIUM ION | |||
5dhp | [A4] | [A4] | [A4] | 2.27 | 5AQ:8-({2-OXO-2-[(2-PHENYLETHYL)AMINO]ETHYL}SULFANYL)ADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
5dhq | [A4] | [A4] | [A4] | 2.29 | 5AK:8-[(2-{[2-(3-BROMOPHENYL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]ADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
5dhr | [A4] | [A4] | [A4] | 2.31 | 5AJ:5___sq___-AZIDO-8-[(2-{[2-(1H-BENZIMIDAZOL-2-YL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]-5___sq___-DEOXYADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
5dhs | [A4] | [A4] | [A4] | 2.62 | 5AG:5___sq___-AZIDO-5___sq___-DEOXY-8-[(2-{[2-(3-ETHYNYLPHENYL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]ADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
5dht | [A4] | [A4] | [A4] | 2.59 | 5A9:5___sq___-AZIDO-8-[(2-{[2-(3-BROMOPHENYL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]-5___sq___-DEOXYADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
5dhu | [A4] | [A4] | [A4] | 2.33 | 5A8:5___sq___-AZIDO-5___sq___-DEOXY-8-[(2-{[2-(1H-INDOL-3-YL)ETHYL]AMINO}-2-OXOETHYL)SULFANYL]ADENOSINE CIT:CITRIC ACID GOL:GLYCEROL | |||
5ejf | [A4] | [A4] | [A4] | 2.12 | ||||
5ejg | [A4] | [A4] | [A4] | 2.88 | ||||
5eji | [A4] | [A4] | [A4] | 2.29 | CIT:CITRIC ACID MN:MANGANESE (II) ION NAP:NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE POP:PYROPHOSPHATE 2- |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA